Public SmartTables Directory

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A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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	SmartTable	Description	Organism	Type	Size	Owner	Update Time
1	48 pp sars, Bannerman et al 2021		Homo sapiens	pathways, all-genes	49	Bridget Bannerman	2 days ago 09:56 am
2	Second Napkin problem (with two or more confounders)	W->R->X->Y<-V->W<-U->X	Escherichia coli K-12 substr. MG1655	all-genes	911	Jeremy Zucker	Fri Oct 29 2021 03:05 pm
3	Multi-cause, multi-confounder front-door motif		Escherichia coli K-12 substr. MG1655	all-genes	1945	Jeremy Zucker	Tue Oct 19 2021 02:53 pm
4	All instances of Genes in Saccharomyces cerevisiae S288c		Saccharomyces cerevisiae S288c	all-genes	6374	Roland Barriot	Thu Oct 14 2021 08:22 pm
5	All instances of Pathways in Mycobacterium tuberculosis H37Rv		Mycobacterium tuberculosis H37Rv	pathways	287	Roland Barriot	Thu Oct 14 2021 01:36 pm
6	All instances of Genes in Mycobacterium tuberculosis H37Rv		Mycobacterium tuberculosis H37Rv	all-genes	4072	Roland Barriot	Thu Oct 14 2021 01:35 pm
7	All instances of Genes in Bacillus subtilis subtilis 168		Bacillus subtilis subtilis 168	all-genes	4461	Roland Barriot	Thu Oct 14 2021 01:32 pm
8	All instances of Pathways in Bacillus subtilis subtilis 168		Bacillus subtilis subtilis 168	pathways	328	Roland Barriot	Thu Oct 14 2021 01:31 pm
9	All proteins (polypeptides + protein complexes) of E. coli K-12 substr. MG1655		Escherichia coli K-12 substr. MG1655	compounds, complexes, proteins	5731	Adrian Lange	Mon Oct 11 2021 08:49 am
10	All instances of Genes in Escherichia coli K-12 substr. MG1655		Escherichia coli K-12 substr. MG1655	all-genes	4523	Roland Barriot	Wed Oct 06 2021 01:43 am
11	all transcription-units		Escherichia coli K-12 substr. MG1655	transcription-units	3697	Roland Barriot	Wed Oct 06 2021 01:26 am
12	All instances of Pathways in Escherichia coli K-12 substr. MG1655		Escherichia coli K-12 substr. MG1655	pathways	442	Roland Barriot	Tue Oct 05 2021 08:41 pm
13	L. plantarum WCFS1 transporters	L. plantarum transporters; created in the Tier 3 db to compare NCBI annotation output with Transport DB. Search terms used "transporter, permease, channel, antiporter, symporter, flippase, exporter, efflux".	Lactobacillus plantarum WCFS1	proteins	364	Amanda Mackie	Tue Sep 07 2021 08:52 pm
14	E. coli K-12 substr. MG1655 genes with TAG stop codon - no second stop codon in 200 bp downstream		Escherichia coli K-12 substr. MG1655	all-genes	45	Gabriella Machado	Sat Aug 28 2021 03:54 am
15	Genes of E. coli K-12 substr. MG1655 with TAG stop codon			string	330	Gabriella Machado	Sat Aug 28 2021 03:26 am
16	E. coli K-12 substr. MG1655 genes with "other stop codons"		Escherichia coli K-12 substr. MG1655	all-genes	249	Gabriella Machado	Wed Aug 11 2021 09:49 am
17	Ahr Ligands of L-Try degradation via microbes		MetaCyc	pathways	5	Aldrich Zhao	Mon Jul 26 2021 11:16 pm
18	SARS-CoV-2 essential reactions: P-Pi pathway intersection nodes, Bannerman et al., 2021		Homo sapiens	all-genes	27	Bridget Bannerman	Thu Jul 22 2021 02:14 am
19	Compounds that bind transcriptional regulators		Escherichia coli K-12 substr. MG1655	compounds	87	Suzanne Paley	Wed Jun 30 2021 09:49 am
20	all reactions that should be enzyme-catalyzed but do not have an identified enzyme		MetaCyc	reactions	4582	Jeremy Zucker	Tue Jun 29 2021 12:05 am

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