Public SmartTables Directory

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A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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1Selected rows from All transporters of C. difficile CD196

proteins
9
Hualiang PiWed Jan 20 2021 01:01 pm
2Alignment ExampleSimple set of organisms for demonstrating multiple sequence alignment.

ocelot-kb
4
Peter MidfordWed Jan 20 2021 06:28 am
3 All protein complexes of E. coli K-12 substr. MG1655All protein complexes in EcoCyc, with columns for their components and the corresponding genes.
Escherichia coli K-12 substr. MG1655
proteins, complexes
1136
Suzanne PaleyThu Jan 07 2021 11:24 am
4Location, Copy-Number, esentiality, All genes of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
4709
Tatsuya SakaguchiMon Jan 04 2021 06:18 pm
5ontology_All_compounds_MetaCyc
MetaCyc
proteins, compounds
16631
Wiley BartonFri Jan 01 2021 09:20 am
6ontology_All_pathways_MetaCyc
MetaCyc
pathways
3228
Wiley BartonFri Jan 01 2021 09:04 am
7Ontology_all_instances_v1_public
MetaCyc
pathways
3143
Wiley BartonTue Dec 29 2020 08:00 am
8front-door regulatory motifsMatches all regulatory motifs of the form Cause -> Mediator -> Effect and Cause <- Regulator -> ...
Escherichia coli K-12 substr. MG1655
all-genes
151
Jeremy ZuckerSat Dec 19 2020 05:11 pm
9Curated_DNA_binding_transcriptional_regulators
Escherichia coli K-12 substr. MG1655
all-genes
300
Scott SaundersThu Dec 10 2020 06:38 pm
10Gold_standard_transcription_unitsGold standard transcription units / promoters from RegSeq paper.
Escherichia coli K-12 substr. MG1655
promoters
18
Scott SaundersFri Dec 04 2020 04:12 pm
11AA_TUs
Escherichia coli K-12 substr. MG1655
transcription-units
11
Scott SaundersWed Dec 02 2020 01:34 pm
12measured_genes
Escherichia coli K-12 substr. MG1655
all-genes
58
Naoki HatanakaWed Dec 02 2020 01:57 am
13New SmartTable with 2-methylserine
MetaCyc
compounds
1
Danielle VigilMon Nov 30 2020 05:22 am
14Gold_standard_TF_binding_sites
Escherichia coli K-12 substr. MG1655
dna-binding-sites
57
Scott SaundersWed Nov 25 2020 04:30 pm
15Gold_Standard_Transcription_units_public
Escherichia coli K-12 substr. MG1655
transcription-units
15
Scott SaundersWed Nov 25 2020 11:46 am
16New SmartTable with trpA

all-genes
4
Anamika KothariWed Nov 11 2020 09:39 am
17All compounds of MetaCyc
MetaCyc
compounds
16179
Joanna WolthuisWed Oct 28 2020 01:50 pm
18Cornerstone Cheeses
MetaCyc
reactions
5869
Ben RobinsonSun Oct 25 2020 03:32 pm
19Essential genes in Clostridioides difficile R20291SmartTable created from essential genes reported in Dembek et al., MBio 6(2):e02383 (2015).
Clostridioides difficile R20291
all-genes
377
Ingrid KeselerWed Sep 30 2020 09:23 am
20Growth-Status of all genes (E. coli K-12 substr. MG1655)
Escherichia coli K-12 substr. MG1655
all-genes
4708
Tatsuya SakaguchiThu Sep 24 2020 04:02 pm
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MetaCyc version 25.0.