Public SmartTables Directory

Welcome to SmartTables

A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

[SmartTables Documentation] [Directory of SmartTables Users]

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	SmartTable	Description	Organism	Type	Size	Owner	Update Time
1	Essential genes in Clostridioides difficile R20291	SmartTable created from essential genes reported in Dembek et al., MBio 6(2):e02383 (2015).	Clostridioides difficile R20291	all-genes	377	Ingrid Keseler	Wed Sep 30 2020 09:23 am
2	Growth-Status of all genes (E. coli K-12 substr. MG1655)		Escherichia coli K-12 substr. MG1655	all-genes	4708	Tatsuya Sakaguchi	Thu Sep 24 2020 04:02 pm
3	Copy number and essentiality of all genes (E. coli K-12 substr. MG1655)		Escherichia coli K-12 substr. MG1655	all-genes	4703	Tatsuya Sakaguchi	Tue Sep 15 2020 08:41 am
4	front-door regulatory motifs	Matches all regulatory motifs of the form Cause -> Mediator -> Effect and Cause <- Regulator -> ...	Escherichia coli K-12 substr. MG1655	all-genes	151	Jeremy Zucker	Tue Sep 01 2020 12:00 am
5	New SmartTable - 2020-08-20T04:13:12-07:00		MetaCyc	pathways	387	Paschalis Natsidis	Thu Aug 20 2020 05:00 am
6	COG-annotations-and-functional-groups	COG annotations and functional classes Based on: Galperin MY, Makarova KS, Wolf YI, Koonin EV. Exp...	Escherichia coli K-12 substr. MG1655	all-genes	2834	H Deter	Tue Jul 21 2020 08:11 am
7	Cellular state biomarkers		Bacillus subtilis subtilis 168	all-genes	11	YIMING HUANG	Sat Jul 04 2020 11:48 am
8	All compounds of S. cerevisiae S288c		Saccharomyces cerevisiae S288c	proteins, compounds	1569	John W. K. Oliver	Tue Jun 16 2020 10:35 pm
9	GeneGO_Desulfovibriovulgaris			all-genes	3226	Bryant Chambers	Wed May 13 2020 11:38 am
10	RNA-seq data for RpoD_WT at 37C		Escherichia coli K-12 substr. MG1655	all-genes	4418	Bokyung Son	Wed May 06 2020 07:45 am
11	All CG data E. coi vs Tellurite	All Chemical Genomics data from E. coli vs tellurite	Escherichia coli K-12 substr. MG1655	string, all-genes	3521	Roberto Luraschi	Tue May 05 2020 09:27 am
12	E. coli binding-sites	To generate this ST, I started with the special ST for all transcription factors. I then added the t...	Escherichia coli K-12 substr. MG1655	dna-binding-sites	3153	Suzanne Paley	Mon Apr 27 2020 12:47 am
13	DESeq ZC vs YC			string, all-genes	243	Matthew Hinderhofer	Thu Apr 16 2020 10:07 am
14	DESeq YC vs YMC			all-genes	43	Matthew Hinderhofer	Thu Apr 16 2020 10:05 am
15	DESeq ZC vs ZB			string, all-genes	548	Matthew Hinderhofer	Thu Apr 16 2020 10:04 am
16	New SmartTable with HDCHBGLK_RS13665			all-genes	1	Suzanne Paley	Thu Mar 12 2020 12:43 pm
17	All compounds of MetaCyc		MetaCyc	proteins, compounds	14338	Joanna Wolthuis	Sun Feb 09 2020 03:05 am
18	InsH proteins		Escherichia coli K-12 substr. MG1655	all-genes	12	Ingrid Keseler	Tue Feb 04 2020 09:16 am
19	All_reactions_EC_MetaCyc		MetaCyc	reactions	15499	Neeraj Kumar	Sat Feb 01 2020 11:21 am
20	Essential genes in Pseudomonas		Pseudomonas putida KT2440	all-genes	3	Jeremy Zucker	Tue Jan 28 2020 04:23 pm

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