Public SmartTables Directory

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A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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	SmartTable	Description	Organism	Type	Size	Owner	Update Time
1	Genes of E. coli K-12 substr. MG1655 with TAG stop codon			string	330	Gabriella Machado	Thu Sep 22 2022 12:34 am
2	Copy number and essentiality of all genes (E. coli K-12 substr. MG1655)		Escherichia coli K-12 substr. MG1655	all-genes	4702	Tatsuya Sakaguchi	Thu Sep 22 2022 06:42 am
3	Pathway.Selenite.FC2		Pseudomonas putida KT2440	pathways	32	Said Munoz	Wed Jul 20 2022 12:41 am
4	STELLA	STELLA algorithm example table https://github.com/ComplexityBiosystems/STELLA/blob/main/2_CreateTable_Metacyc.R	MetaCyc	pathways	3388	Matteo Tajana	Mon Jul 18 2022 05:06 am
5	potential chromosome integration sites - Flagellar		Escherichia coli K-12 substr. MG1655	pseudo-products, proteins	36	Thomas Reilly	Thu Jul 07 2022 02:33 pm
6	Double negative Regulators		Escherichia coli K-12 substr. MG1655	proteins	677	Jeremy Zucker	Fri Jul 01 2022 02:01 pm
7	Linear regulators of E. coli		Escherichia coli K-12 substr. MG1655	all-genes	473	Jeremy Zucker	Fri Jul 01 2022 01:27 pm
8	5 STRING from a list		Escherichia coli K-12 substr. MG1655	all-genes	5	Anamika Kothari	Fri Jun 24 2022 08:51 am
9	Copy of Drug-efflux transporters represented in EcoCyc and their reactions	Efflux pump genes and their regulators in E. coli K-12	Escherichia coli K-12 substr. MG1655	proteins	27	Danna Gifford	Mon May 30 2022 06:28 am
10	Copy of All transporters of E. coli K-12 substr. MG1655	Transporter genes and their regulators in E. coli K-12	Escherichia coli K-12 substr. MG1655	proteins	480	Danna Gifford	Tue May 17 2022 07:23 am
11	MetaCyc Pathway Classes		MetaCyc	pathways	674	Suzanne Paley	Wed May 11 2022 09:51 am
12	Curated transcription factor binding regulatory interactions in BsubCyc		Bacillus subtilis subtilis 168	regulation	169	Suzanne Paley	Mon May 09 2022 10:26 am
13	Genes in transcription unit from Curated transcription factor binding regulatory interactions		Bacillus subtilis subtilis 168	all-genes	331	Suzanne Paley	Mon May 09 2022 10:17 am
14	E. coli transcription factor DNA-binding region sequences		Escherichia coli K-12 substr. MG1655	all-genes	203	Suzanne Paley	Wed Apr 20 2022 05:06 pm
15	Km Kcat enzymes of E. coli K-12 substr. MG1655		Escherichia coli K-12 substr. MG1655	proteins	1425	Yang Yu	Sat Mar 26 2022 03:21 pm
16	Km Kcat All enzymes of B. subtilis subtilis 168		Bacillus subtilis subtilis 168	proteins	997	Yang Yu	Fri Mar 11 2022 07:05 pm
17	All transcription units of E. coli K-12 substr. MG1655 with promoter and terminator coords		Escherichia coli K-12 substr. MG1655	transcription-units	3697	Suzanne Paley	Thu Feb 24 2022 06:50 pm
18	Multi-cause, multi-confounder front-door motif	Causes-> Mediator->Effects<-Regulators->Causes	Escherichia coli K-12 substr. MG1655	all-genes	1945	Jeremy Zucker	Fri Feb 18 2022 11:54 am
19	all attenuators, cryptic prophages, mRNA binding sites, origin of replication, extragenic sites, ph		Escherichia coli K-12 substr. MG1655	mrna-binding-sites, dna-segments, extragenic-sites, dna-binding-sites, transcription-units, terminators, promoters	13228	Carl Stone	Tue Jan 11 2022 12:24 am
20	Hall Study humann3 pathways		MetaCyc	string	320	Poorani Subramanian	Thu Jan 06 2022 10:25 am

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